Microbiology Terms Starting With B
Microbiology Glossary: B
Bacillus
/ bah-SIL-us / · Latin bacillum, small rod
Bacillus is both a general term for a rod-shaped bacterium and the formal genus name for a group of gram-positive, endospore-forming bacteria common in soil, food, and clinical microbiology.
In morphology, bacillus describes a bacterial cell with a rod-like shape, as opposed to cocci, which are spherical, or spirilla, which are spiral-shaped. Taxonomically, Bacillus with a capital B refers to a specific genus of aerobic or facultatively anaerobic, spore-forming bacteria. The species Bacillus subtilis is a major model organism for studying bacterial chromosome replication, cell division, and sporulation, while Bacillus anthracis causes anthrax and produces environmentally persistent endospores.
Bacillus thuringiensis produces insecticidal crystal proteins used in biological pest control, showing that the same genus contains research tools, agricultural allies, and serious pathogens.
Bacillus subtilis can form an endospore in roughly 6 to 8 hours after nutrient limitation begins. That developmental program requires coordinated changes in hundreds of genes and produces a dormant cell able to survive heat, drying, and chemical stress.
Every bacillus belongs to the genus Bacillus. Many rod-shaped bacteria, including Escherichia coli and Salmonella enterica, are bacilli by shape but do not belong to the genus Bacillus.
Bacillus anthracis forms rod-shaped vegetative cells and highly resistant endospores in contaminated soil. Anthrax spores can remain viable for decades, which is why animal burial sites and old contaminated pastures can remain hazardous long after an outbreak ends within a measurable window of 24 to 48 hours.
Bacteria
/ bak-TEER-ee-ah / · Greek bakterion, small staff
Bacteria are single-celled prokaryotic microorganisms with peptidoglycan-containing cell walls, no membrane-bound nucleus, and diverse metabolisms that allow them to inhabit nearly every environment on Earth.
Bacteria reproduce mainly by binary fission, and fast-growing species such as Escherichia coli can divide in about 20 minutes under ideal laboratory conditions. Their compact genomes, plasmids, and capacity for horizontal gene transfer allow rapid adaptation to antibiotics, immune pressure, and changing environments. Bacteria occupy habitats ranging from boiling hydrothermal vents and acid mine drainage to Antarctic ice, plant roots, and the human gut.
A minority cause disease, but most are harmless or beneficial, recycling nutrients, fixing nitrogen, fermenting foods, synthesizing vitamins, and shaping immune development in animals.
The human colon contains tens of trillions of bacterial cells, many of which ferment otherwise indigestible dietary fiber. Their metabolites, especially short-chain fatty acids such as butyrate, help feed colon cells and regulate inflammation.
Bacteria are tiny animals. Bacteria are prokaryotic cells that lack a nucleus and differ fundamentally from animal cells in structure, genetics, and reproduction.
Difference Between Prokaryotic and Eukaryotic Cells →Lactobacillus delbrueckii subsp. bulgaricus ferments lactose into lactic acid during yogurt production. During incubation at about 42 degrees Celsius, acid production lowers the pH to roughly 4.5, giving yogurt its sour flavor and causing milk proteins to thicken into a gel.
Bacterial Metabolism
/ bak-TEER-ee-ul meh-TAB-oh-liz-um / · Greek bakterion, small staff; Greek metabole, change
Bacterial Metabolism is the full set of chemical reactions bacteria use to obtain energy, acquire carbon, build cellular components, and maintain life under specific environmental conditions.
Bacterial metabolism is far more diverse than animal metabolism because bacteria use many different energy sources, carbon sources, and terminal electron acceptors. Aerobic heterotrophs oxidize organic compounds with oxygen, while anaerobic respirers use nitrate, sulfate, iron, or carbon dioxide when oxygen is absent. Phototrophic bacteria capture light energy, chemolithotrophs oxidize inorganic chemicals such as ammonia or hydrogen sulfide, and fermenters generate ATP without an external electron acceptor.
This diversity drives major biogeochemical cycles, including carbon fixation, nitrification, sulfur oxidation, methane production, and decomposition in soils, oceans, sediments, and host-associated microbiomes.
Some bacteria can change their metabolism within minutes when oxygen or nutrients shift. Escherichia coli, for example, represses many fermentation pathways in oxygenated medium and activates them when oxygen becomes limiting.
Different Shapes of Bacteria →All bacteria eat the same food. Different bacteria use different combinations of energy source, carbon source, and electron acceptor, which is why some grow on sugars while others grow on ammonia, sulfide, or hydrogen gas.
Nitrosomonas europaea gains energy by oxidizing ammonia to nitrite in soils and wastewater systems. Under favorable aerobic conditions, nitrifying communities can convert several kilograms of ammonia-nitrogen per hectare per day, making bacterial metabolism central to fertilizer cycling and water treatment.
Bacteriophage
/ bak-TEER-ee-oh-fayj / · Greek bakterion (rod) + phagein (to eat)
Bacteriophage is a virus that infects bacteria, replicating inside bacterial cells and often shaping bacterial evolution through lysis, lysogeny, and horizontal gene transfer.
A bacteriophage attaches to specific receptors on the bacterial surface, injects its genetic material, and then follows either a lytic or lysogenic pathway. During the lytic cycle, the phage redirects host machinery to make viral components and bursts the cell to release new particles. Lysogenic infection instead places the phage genome in the bacterial chromosome as a prophage, where it is copied with the host until induction triggers lytic replication.
Phages are the most abundant biological entities in many environments, influence marine nutrient cycling by killing bacteria, and are being investigated as targeted therapies for antibiotic-resistant infections.
Bacteriophages kill an estimated 20 to 40 percent of marine bacterial cells each day. This viral shunt releases organic matter back into seawater and redirects carbon and nutrients through microbial food webs.
Bacteriophages infect human cells. Bacteriophages specifically infect bacteria, and their receptor specificity often limits them to particular bacterial species or strains.
T4 bacteriophage infects Escherichia coli by attaching to receptors on the outer membrane and injecting its DNA through a contractile tail. At 37 degrees Celsius, one infected cell can release about 100 to 200 new phage particles after a lytic cycle lasting roughly 25 minutes.
E-coli →Binary Fission
/ BY-nair-ee FISH-un / · Latin binarius (two together) + fissio (splitting)
Binary Fission is the asexual division process in which one prokaryotic cell replicates its chromosome, segregates the copies, and splits into two daughter cells.
Binary fission begins when the bacterial chromosome starts replication at the origin and newly copied DNA moves toward opposite regions of the elongating cell. The tubulin-like protein FtsZ assembles into a Z-ring at midcell and recruits the divisome, the protein machinery that builds the septum. Peptidoglycan synthesis closes the septum, membranes constrict, and the parent cell separates into two daughters that are usually genetically identical unless mutation or horizontal gene transfer has occurred.
Growth rate depends strongly on species and environment, ranging from minutes in very fast-growing bacteria to many hours in slow pathogens such as Mycobacterium tuberculosis.
Escherichia coli can initiate overlapping rounds of chromosome replication when nutrients are abundant. This enables cells to divide every 20 minutes even though full chromosome replication takes longer than one generation.
Binary fission is the same as sexual reproduction. Binary fission produces daughter cells from one parent without gametes, meiosis, or fusion of genetic material from two individuals.
Escherichia coli divides by binary fission in nutrient-rich laboratory broth at 37 degrees Celsius. Under optimal conditions, a single cell can produce more than one million descendants in about 7 hours if nutrients and space remain available.
E-coli →Biofilm
/ BY-oh-film / · Greek bios (life) + Latin filum (thread)
Biofilm is a structured microbial community attached to a surface and embedded in a self-produced extracellular matrix of polysaccharides, proteins, lipids, and extracellular DNA.
Biofilm formation begins when planktonic cells attach reversibly to a surface, strengthen that attachment, form microcolonies, and secrete an extracellular polymeric matrix. Cells inside the biofilm experience gradients of oxygen, nutrients, pH, and waste products, so microbes only micrometers apart can behave very differently. Biofilm cells are commonly 10 to 1,000 times more tolerant of antibiotics than free-living cells because the matrix slows penetration, cells grow more slowly, and stress-response pathways are activated.
Clinically important biofilms form on teeth, catheters, prosthetic joints, heart valves, and cystic fibrosis airways, where they contribute to chronic and recurrent infections.
Dental plaque is one of the most familiar biofilms and can contain hundreds of bacterial species. Its matrix traps acids near enamel, allowing localized demineralization even when saliva buffers the rest of the mouth.
Bacteria always live as isolated single cells. Many bacteria spend much of their natural life in attached biofilm communities that behave differently from free-floating cells of the same species.
Pseudomonas aeruginosa forms biofilms in the thick airway mucus of people with cystic fibrosis. Cells in these biofilms can be up to 1,000 times more tolerant of some antibiotics than planktonic cells, contributing to infections that persist for years despite treatment.
Biosafety Cabinet
/ BY-oh-SAYF-tee KAB-ih-net / · Scientific term used in laboratory safety.
Biosafety Cabinet is a ventilated laboratory enclosure that uses controlled airflow and HEPA filtration to reduce worker, sample, and environmental exposure to infectious aerosols.
A Class II biosafety cabinet draws room air inward through the front opening, passes air through high-efficiency particulate air filters, and directs clean air over the work surface while exhausting filtered air. HEPA filters remove 99.97 percent of particles that are 0.3 micrometers in diameter, including most bacteria-containing droplets and many aerosolized particles. Class I cabinets protect the worker and environment but not the sample, Class II cabinets protect all three, and Class III cabinets are sealed gloveboxes used for the highest-risk agents.
Good technique includes slow arm movements, uncluttered work surfaces, verified airflow, and sterile disposable tools or approved electric sterilizers rather than open flames, which can disrupt airflow and create fire hazards.
A biosafety cabinet is not the same as a chemical fume hood. A fume hood protects against chemical vapors, while a biosafety cabinet protects against biological aerosols through directional airflow and HEPA filtration.
A biosafety cabinet creates a completely sterile room. It protects a defined work area through filtered airflow, but contamination can still occur if materials, hands, or instruments are moved improperly inside the cabinet.
Clinical laboratories use Class II biosafety cabinets when handling sputum specimens that may contain Mycobacterium tuberculosis. The cabinet face velocity is commonly maintained near 0.5 meters per second, pulling aerosols away from the worker while HEPA-filtered air protects the specimen.
Broad-Spectrum Antibiotic
/ BRAWD SPEK-trum an-tee-by-OT-ik / · Old English brad (wide) + Latin spectrum (appearance)
Broad-Spectrum Antibiotic is an antimicrobial drug active against many bacterial groups, often including both gram-positive and gram-negative species.
Broad-spectrum antibiotics target bacterial processes shared across many taxa, such as protein synthesis, DNA replication, or cell wall assembly. They are valuable for empiric treatment when a serious infection must be treated before culture results identify the causative organism. Their breadth also creates tradeoffs, because they disrupt normal microbiota and can select for resistant organisms across many bacterial species at once.
Fluoroquinolones, tetracyclines, third-generation cephalosporins, and carbapenems are common broad-spectrum classes, though the exact spectrum varies by drug and by local resistance patterns.
Broad-spectrum antibiotic use is one of the major risk factors for Clostridioides difficile infection. When competing gut bacteria are suppressed, C. difficile spores can germinate and produce toxins that inflame the colon.
Broader always means better. Broad-spectrum antibiotics can be lifesaving in emergencies but may cause more microbiome disruption and resistance selection than a narrow drug chosen after culture results.
Doxycycline inhibits bacterial protein synthesis by binding the 30S ribosomal subunit and has activity against many gram-positive, gram-negative, and atypical bacteria. A standard adult dose of 100 milligrams twice daily can treat infections ranging from rickettsial disease to certain respiratory and skin infections, depending on susceptibility.
