Biotechnology Terms Starting With P
Biotechnology Glossary: P
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Phage Display
/ FAYJ dih-SPLAY / · From Greek phagein, to devour or eat, referring to bacteriophages. Display from Latin displicare, to unfold or spread out for viewing.
Phage Display molecular technique where proteins or peptides are expressed on the surface of bacteriophages, linking genotype to phenotype for high-throughput screening and selection.
Phage display was invented by George Smith in 1985 and revolutionized antibody engineering and drug discovery by allowing libraries of up to 10 billion different protein variants to be screened simultaneously. Foreign DNA is inserted into phage coat protein genes, typically pIII or pVIII of filamentous M13 phage, causing the encoded peptide or protein to be displayed on the viral surface while the corresponding DNA remains packaged inside. After binding selection against a target antigen, bound phages are recovered, amplified in bacterial hosts, and subjected to additional rounds of selection to enrich high-affinity binders.
This technique enabled the development of adalimumab, the world’s first fully human antibody drug discovered through phage display, which generates over 20 billion dollars in annual sales. Modern applications include epitope mapping, enzyme evolution, and identification of protein-protein interaction domains.
George Smith and Gregory Winter shared the 2018 Nobel Prize in Chemistry for phage display technology, which has been used to develop more than a dozen FDA-approved therapeutic antibodies. A single phage display library can contain more unique sequences than there are stars in the Milky Way galaxy, enabling the discovery of binders to virtually any target molecule.
Phage display only works for antibodies. It has been successfully applied to evolve enzymes, identify receptor ligands, map protein-protein interaction sites, and develop peptide-based drugs, with non-antibody applications now comprising a substantial portion of published phage display research.
Cambridge scientists used phage display to discover peptides that specifically bind amyloid-beta plaques in Alzheimer's disease brain tissue, providing potential diagnostic and therapeutic leads. The biotech company Dyax, later acquired by Shire, developed ecallantide using phage display, a protein drug that treats hereditary angioedema by inhibiting the kallikrein enzyme with nanomolar affinity.
Pharmacogenomics
/ far-mah-koh-jeh-NOH-miks / · Greek pharmakeia, drug making; Greek genea, birth; Greek nomos
Pharmacogenomics is the study of how genetic variation in an individual influences their response to drugs, enabling personalized selection of medications and doses.
Variants in genes encoding drug-metabolizing enzymes, drug transporters, and drug targets alter efficacy and toxicity across individuals and populations. FDA-approved pharmacogenomic biomarkers now guide dosing or prescribing for over 100 drugs including warfarin, clopidogrel, codeine, and tamoxifen. Implementation of pharmacogenomic testing at the point of care is a central goal of precision medicine initiatives worldwide.
Pharmacogenomics studies how genetic differences affect drug response. It can help predict dose, benefit, or risk of side effects for some medicines.
How To Become An Internal Medicine Specialist? →One drug dose works equally for everyone. Genes affecting drug metabolism or targets can make responses differ among people.
Variants in CYP2C19 affect how some people activate the drug clopidogrel. Genetic testing can help guide antiplatelet treatment decisions in certain patients.
Polycistronic mRNA
/ pol-ee-sis-TRON-ik em-ar-en-AY / · From Greek poly, many, and Latin cis, on this side of, plus Greek stron, from stronnynai, to spread out. Originally referring to genetic organization.
Polycistronic mRNA single messenger RNA molecule that encodes multiple separate proteins, each with its own start and stop codons, typically found in prokaryotes.
Polycistronic mRNA is the defining feature of bacterial operons, where functionally related genes are transcribed together under a single promoter and produce multiple proteins from one transcript. The lac operon produces a polycistronic mRNA encoding three enzymes: beta-galactosidase, permease, and transacetylase, all involved in lactose metabolism. Ribosomes can initiate translation at multiple ribosome binding sites along the same mRNA, producing different proteins in a coordinated manner.
In eukaryotes, mRNA is almost exclusively monocistronic due to the cap-dependent scanning mechanism of translation initiation, although some viral strategies and engineered constructs exploit internal ribosome entry sites to achieve polycistronic expression. Synthetic biologists now design polycistronic systems using 2A peptide sequences that allow multiple proteins to be expressed from a single open reading frame in mammalian cells.
The trp operon in E. coli produces a single polycistronic mRNA over 6,800 nucleotides long that encodes five different enzymes required for tryptophan biosynthesis. Some bacteriophages like T7 produce polycistronic transcripts that can encode more than 20 different proteins from a single promoter, maximizing genetic economy in their small genomes.
Polycistronic mRNA requires alternative splicing to produce multiple proteins. Polycistronic transcripts contain multiple complete open reading frames, each with its own start and stop codons, and ribosomes translate each sequentially in prokaryotes without any splicing; alternative splicing is a eukaryotic mechanism applied to monocistronic pre-mRNAs.
The histidine biosynthesis operon in Salmonella typhimurium produces a polycistronic mRNA encoding eight enzymes in a coordinated fashion, allowing the bacterium to rapidly respond to histidine depletion by simultaneously producing all necessary biosynthetic machinery. Bacillus subtilis uses polycistronic organization extensively, with some operons containing up to 20 genes transcribed as a single message.
Protein Engineering
/ PROH-teen en-jih-NEER-ing / · Greek protos, first; engineer
Protein engineering is the scientific practice of deliberately modifying the structure of proteins, such as insulin or antibodies, to improve their function, create new capabilities, or make them more suitable for medical or industrial applications.
Protein engineering involves substituting, inserting, or deleting amino acids at specific positions to alter protein structure and function. Single amino acid changes can shift protein stability by affecting hydrogen bonding and hydrophobic interactions, alter enzyme catalytic rates through active site geometry, or modify binding affinity by changing surface charge distribution. Rational engineering uses three-dimensional crystal structures and computational models to predict which substitutions will produce desired changes, while directed evolution screens thousands of variants to identify improvements in catalytic efficiency, thermostability, or novel binding specificity.
Protein engineering changes amino acid sequences to alter how a protein behaves. Small changes can affect stability, binding, speed, or specificity.
Building Blocks of Proteins →Protein engineering always creates artificial proteins unrelated to nature. Many engineered proteins are modified versions of natural proteins.
Engineered insulin analogs have amino acid changes that alter how fast they act in the body. This helps match insulin action to patient needs.
