Top : Databases : Protein Databases
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A Library of Protein Family Cores
- We have taken structural alignments of protein families and computed average core structures for each family. The core structures can be divided into residues with low spatial variation and those with high spatial variation. Amino acids with low spatial variance occupy essentially the same relative position in all family members. This library is useful for building models, threading, and exploratory analysis. It is also a useful mechanism for summarizing variability in NMR structures.
http://www-camis.stanford.edu/projects/helix/LPFC/
Added: 12-May-2000 Hits: 584 Rating: 8.00 Votes: 1
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Amino Acids Sequence Database (PRF/SEQDB)
- This database consists of amino acid sequrences of peptides and proteins, including sequences predicted from genes. You can also search literature in which the sequence is presented.
Sequences not included in EMBL, GenBank and SwissProt are also found in PRF/SEQDB since it is constructed on the basis of all amino acid sequences of peptides and proteins reported in literature.
http://www.prf.or.jp/en/
Added: 9-Nov-2002 Hits: 486 Rating: 0 Votes: 0
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BIOINFO BANK
- Analysis of protein an dprotein-DNA interactions.
http://gibk26.bse.kyutech.ac.jp/jouhou/jouhoubank.html
Added: 26-Jun-2003 Hits: 323 Rating: 0 Votes: 0
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Cytokine Family Database
- The Cytokine Family Database (dbCFC) is a collection of EST (Expressed Sequence Tag) records of cytokines deposited in the NCBI GenBank. It provides information about the identification of EST records to cytokine members and related data contained in other databases.
http://cytokine.medic.kumamoto-u.ac.jp/
Added: 9-Nov-2002 Hits: 420 Rating: 0 Votes: 0
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MHCPEP
- MHCPEP is a database comprising over 13000 peptide sequences known to bind MHC molecules. Entries were compiled from published reports as well as from direct submissions of experimental data. Each entry contains the peptide sequence, its MHC specificity and, when available, experimental method, observed activity, binding affinity, source protein, anchor positions, and publication references.
http://wehih.wehi.edu.au/mhcpep/
Added: 9-Nov-2002 Hits: 355 Rating: 0 Votes: 0
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OWL
- OWL is a non-redundant composite of 4 publicly-available primary sources: SWISS-PROT, PIR (1-3), GenBank (translation) and NRL-3D. SWISS-PROT is the highest priority source, all others being compared against it to eliminate identical and trivially-different sequences. The strict redundancy criteria render OWL relatively "small" and hence efficient in similarity searches.
http://www.bioinf.man.ac.uk/dbbrowser/OWL/
Added: 9-Nov-2002 Hits: 337 Rating: 0 Votes: 0
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PDB - The Protein Data Bank
- An international repository for the processing and distribution of 3-D macromolecular structure data primarily determined experimentally by X-ray crystallography and NMR.
http://www.rcsb.org/pdb/
Added: 9-Nov-2002 Hits: 627 Rating: 0 Votes: 0
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PIR - Protein Information Resource
- The Protein Information Resource (PIR), in collaboration with the Munich Information Center for Protein Sequences(MIPS) and the Japanese International Protein Sequence Database (JIPID) maintains the PIR-International Protein Sequence Database - a comprehensive, annotated, and non-redundant set of protein sequence databases in which entries are classified into family groups and alignments of each group are available.
http://pir.georgetown.edu/
Added: 9-Nov-2002 Hits: 408 Rating: 0 Votes: 0
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PIR-NREF
- The PIR-NREF is a Non-redundant REFerence protein database designed to provide a timely and comprehensive collection of all protein sequence data, keeping pace with the genome sequencing projects and containing source attribution and minimal redundancy.
http://pir.georgetown.edu/pirwww/search/pirnref.shtml
Added: 9-Nov-2002 Hits: 352 Rating: 0 Votes: 0
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PMD
- The Protein Mutant Database (PMD) covers natural as well as artificial mutants, including random and site-directed ones, for all proteins except members of the globin and immunoglobulin families. The PMD is based on literature, not on proteins. That is, each entry in the database corresponds to one article which may describe one, several or a number of protein mutants.
http://pmd.ddbj.nig.ac.jp/
Added: 9-Nov-2002 Hits: 454 Rating: 0 Votes: 0
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