Top : Databases : Protein Domains
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CDD
- A Conserved Domain Database and Search Service.
http://www.ncbi.nlm.nih.gov/Structure/cdd/cdd.shtml
Added: 10-Nov-2002 Hits: 520 Rating: 0 Votes: 0
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DOMO
- DOMO is a database of homologous protein domain families. It was obtained from successive sequence analysis steps including similarity search, domain delineation, multiple sequence alignment and motif construction. 83054 non redundant protein sequences from SWISSPROT and PIR have been analysed yielding a database of 99058 domains clustered into 8877 multiple sequence alignments.
http://www.infobiogen.fr/srs6bin/cgi-bin/wgetz?-page+LibInfo+-lib+DOMO+-newId
Added: 10-Nov-2002 Hits: 477 Rating: 0 Votes: 0
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Pfam
- Pfam is a large collection of multiple sequence alignments and hidden Markov models covering many common protein domains. Pfam version 7.7b (October 2002) contains alignments and models for 4832 protein families, based on the Swissprot 40 and SP-TrEMBL 18 protein sequence databases.
http://pfam.wustl.edu/
Added: 10-Nov-2002 Hits: 420 Rating: 0 Votes: 0
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ProDom
- The Protein Domain database.
http://prodes.toulouse.inra.fr/prodom/doc/prodom.html
Added: 10-Nov-2002 Hits: 446 Rating: 0 Votes: 0
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PROSITE
- PROSITE is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs.
http://www.expasy.org/prosite/
Added: 10-Nov-2002 Hits: 486 Rating: 0 Votes: 0
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